PhD wannabe, Marine biologist & scientist.
Drawer, writer, blogger,
mover, sleeper, jogger,
bicycle & recycle,
play the tuba & all that do-dah
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| Monterey Aquarium, Open Sea Tank. (Photo: Guri S. Andersen) |
| Kelp Forest Tank (Photo: GSA) | Lady and anemones (GSA) | Jelly Tank (Photo: GSA) |
| "In one drop of water..." (Photo:Guri S Andersen) |
| Fascination (GSA) |
| Contact (GSA) |
Mixed Effects Models and Extensions in Ecology with RThank you, Zuur and guys for this awesome PhD-saver!
Tomorrow is the international World Oceans Day. Marinbiologene published this spotify playlist celebrating the day. Wear blue and tell all your friends why. Stop by marinbiobloggen for more info :)
I do love vegetables and sizzling hot shots when they come wrapped up in great ideas. Barton Seaver wants to restore our relationship with the ocean, the land, and with each other through dinner. In his first book, For Cod and Country, Seaver introduces an entirely new kind of casual cooking featuring seafood that hasn’t been overfished or harvested using destructive methods. I became aware of this guy through the TED network a while ago:
Watch and get inspired!
It's been a while since my last post now. I've been quite busy at work trying to squeeze out a PhD... Man, its hard! Got some nasty feedback from a moody editor that put me off a bit, but now I'm back in the saddle and ready to go at it again. Feeling quite confident... at least some of the time... :)
Aside from my attempts(!) to write manuscripts for scientific papers, I've been engaged in blogging at marinbiobloggen (in Norwegian). Lots of exciting material. I've come to worry a great deal about the Norwegian management of marine resources. Therefore, my next posts will deal with some of these issues. Hopefully, I'll be able to present them in a more global perspective than is done at marinbiobloggen.
Yesterday a historical event of great importance not only to marine scientists, but to the global community, took place in London. 2700 scientists from 80 countries met to discuss knowledge that has accumulated through a decade of marine research. The project was initiated 10 years ago and is called Census of Marine Life. This is probably one of the most extensive projects undertaken in the history of science. Check it out on http://www.coml.org/
Be sure to drop by the picture and video galleries!
This footage is just amazing.
Check out John Delaneys' talk about building an underwater network of high-def cameras and sensors that will turn our ocean into a global interactive lab -- at TED.com. I get goose bumps thinking about the vast possibilities in monitoring the world below the ocean surface.
ZPCNFNZ2K3BR
ShareThis
I would like to share this important work by Brian Skerry with you. This kind of documentation of what is going on under the surface is extremely powerful. Both beautiful and horrific situations and stories are told by breathtaking pictures. Please watch it and think about what you can do to protect the oceans. I would suggest a visit to WWF online and checking out the sustainable seafood guide ;)
Photonblues revisited
by: kelpRmy
I'm staring out the window
where I see the mocking sun.
Throwing all those photons at me,
but hitting me with none.
There is this wall between us,
this fucking drag of a thing.
It's called a shitload of work
and keeps my machine from going "BING"!
My RCs are all open, you know
they're ready for some love...
But these love-light conditions, man
are really way below (E 1% **)
Well, as you can tell from hearing this,
i'm doing rather swell.
Excuse me while I ask my ambitious self,
to go take a vacatin - IN HELL!!
Woah, these algae really puzzles me. The PI-curves run at different temperatures (10, 15 and 20 C) before acclimatisation (10 C kelp) are incredibly similar - huge surprise! The first thorough analyses and views of the data with proper calibrations performed on them shows almost no difference in respiratory rates!! What the fuck!? One would think...
Read more HERE...
Edith Widder: Glowing life in an underwater world | Video on TED.com
This is kind of slow at first, but really picks up... Watch it! You will not regret it. Sit back and enjoy the wonderful pictures, the excitement and one hell of an explorer :) Kudos, Edith Widder!
Read more HERE
Typesetting my thesis I came across this problem:
I had a large figure (containing many panes) I wanted to print on one page with a caption underneath.
First I included the graphic by using the following code:
\begin{figure}[htp]
\centering
\includegraphics[scale=1]{"filepath"}
\caption{"Some sort of caption"}
\label{"Figurename"}
\end{figure}
The figure covered up the page nr on the bottom of the page, and the placement looked a bit weird.
After some google browsing, I came across this solution:
\begin{figure}[htp]
\vspace*{-5.0em} % adjust value to shift the top margin
% etc etc etc ...
\end{figure}
Ah, much better. But, I wasn’t quite satisfied with the horizontal adjustment. I thought to myself “hmm, maybe there’s a \hspace as well? -
\begin{figure}[htp]
\vspace*{-5.0em} % adjust value to shift the top margin
\hspace*{-2.0em} % adjust value to shift the left margin
% etc etc etc
\end{figure}
And there it was, right smack where I wanted it :-)
So, it’s finally time to start typesetting my PhD thesis. I decided to go with LaTeX. Main reason: avoid format fuck-ups. The University of Oslo has their own PhD document class. The guidelines can be found here: http://www.mn.uio.no/ifi/tjenester/it/hjelp/latex/uiophd.html
Now, my supervisors are not really familiar with LaTeX, which makes it hard to collaborate on these documents. However, writing documents in LibreOffice Writer and then converting them to tex-files which can be linked together and compiled into one “thesis document” proved quite easy. I just installed Writer2LaTeX. Here is how I got it to work with LibreOffice (in Ubuntu):
sudo apt-get install openoffice.org-java-common If you’re an Ubuntu user like me – check out Gummi. Real neat for editing LaTeX.
http://dev.midnightcoding.org/projects/gummi
So, I had this disk image of a game I used to play before I converted to Linux. The image was burned using Nero. To be able to install the game under wine in Ubuntu I converted it to an iso-image following these steps:
sudo apt-get nrg2iso nrg2iso filename.nrg filename.iso That’s it folks :-)
Got this Polar pulse watch (RS800CX) a while back. With it came the ProTraniner 5 software – not particularly “Linux-friendly” I’m afraid… However, it works fine under wine. To download the data from the watch and sync it with my ProTrainer diary, I had to get the IrDA USB-dongle working. After browsing through various how-to threads, gathering bits and pieces from here and there, I got it working! Since I wasn’t able to find an easy guide out there, I decided to write one myself:
Install Polar ProTrainer 5 under wine.
Open the program and try connecting your gear (the watch). I use an USB irDA dongle.
Get the IrDA dongle working in Ubuntu
This one has been a bit tricky, but following a couple of Ubuntu threads I landed on this approach
sudo apt-get install irda-utils # please be careful, as you are now root lsmod | grep irda sudo gedit /etc/modprobe.d/irda-utils.conf # please be careful, as you are now rootmcs7780 (mcs7780 in my case) at the end, after #alias irda0 sudo gedit /etc/default/irda-utils # please be careful, as you are now root ENABLE="true"
DEVICE="irda0"
MAX_BAUD_RATE="9600" Problems with the IrDA?
If you’ve disconnected the dongle, and the IrDA doesn’t work when you reconnect it (*red flashes*), you’ll probably get there by opening a terminal window and typing sudo irattach irda0 -s
You should now be able to connect your watch and sync it with the Polar ProTrainer5 software. Get out there, get your heart racing, and have fun!
;-)
These notes were made after following the UiO guidelines found here.
Get started:
cd Downloads
sudo mv cups2priss_init /usr/local/bin/ cd /usr/local/bin/ sudo chmod a+rx cups2priss_init sudo cups2priss_init -R
You’ll now be able to access the UiO printers. A list of the different printers can be found here.
Printing:
cd Documents/Out/dirlpr.cups -P[printername] file.pdflpr -P[printername] file.pdflpr -Pprinter3 file.pdfHopefully you’re all set now. Think of the environment before you go bananas, though ;-)
Guri Sogn Andersen is a member of Biological Sciences on Mendeley.
#Hjemmestrikka #sokker er alltid bra å ha,men spesielt når man jobber og sliter på en gråværslørda’. Takk, mamma! #gråvær #jobb #hverdagspoesi
Enjoying my awesome deep tea diver. THANK U @benedicteraae #coolest #cupoftea ever! #tea #diver
Noen ganger er det litt vanskelig å se hvor den ene slutter og den andre begynner @larsqviller
Kveldstur forbi #Hygga. #Ljøsheim #hytte #jul #ski #christmas #Norway (at Andersen Resort Ljøsheim)
Useful post on how to get your Polar pulse watch communicating with ProTrainer 5 via infrared signals using Ubuntu OS. YAY!
One of the #perks of having a #boyfriend that was once a #barista. #coffee #smellslikevictory (at Guri, Lars & Birks)
Here's a treat in the hot Norwegian summer. It can happen, sometimes we actually have days above 20 degrees! This soup is Guri's invention. Blue mussels with muscles. The recipe is simple, and the ingredients are sustainable. You can eat as much blue mussels as you wish. Just be aware of the algae toxins if you collect the mussels by your self. Blue mussels with muscles - 1 kg blue mussels - a
As you've probably figured out, there are two ingredients we love above most - namely, cream and butter. There is nothing like the smell of butter sissling away in a hot pan or the the feel of luscious creamed stuff on the tongue. A couple of days ago we went hunting in the local forest. We went hunting for mushrooms. Not far from the tracks we found great spots where chanterelles,
1/2 dl raisins Salad - mix whatever sorts you can get your hands on 1 dl bean sprouts 1 dl pumpkin seeds cherry tomatoes juice from 1/2 lime 1 tbls good quality balsamico Chop it and mix it. Enjoy! Works great as a side dish to lamb roast and Hellbay Forest Creamed Mushrooms
So... here is the backdrop for the menu tonight. We bought a bottle of quite expensive barolo red wine. Oh, joy... what a feast we were going to have! Back home, all snuggled up in the sofa with pillows and blankets, a movie and what not it turned out to be a BIG disappointment! The wine had turned on us. Acid. Yiack! Turning the disappointment to our advantage, we went trough our fridge in
Yesterdays lamb was waaay too much for two people to consume for dinner. Fortunately, roast leftovers are one of my absolute favourite dishes. At least when served as we did tonight. Although we both love cooking, it's nice to get a great tasting meal with minimum effort. All we had to do was; heat the oven to about 200 C,slice three medium sized potatoes (...we're talking really thin slices!)
Aaahh... Easter dinner as it should be. Lamb is normally stretching our budget a bit, but come Easter and soon to come birthday (when I'll be in Denmark, away from Lars and our dog :( ... ) today we decided to jump into our fancy pants and get crazy. Lamb roast is on the menu. Side dishes will be celery root purée and baked vegetables. - Dig it! Here is what you'll need:LAMB:1 - 1 1/2 kg lamb (we
I'll be having dinner alone today. I'll use today to make a very healthy dish that most people don't like, or more correct, think they don't like. You should give it a try! It has been a belief among people that the oceans are so large that we are unable to empty them, but later management and science has proven this conviction to be wrong. Many resources are depleted, and marine fisheries also
Most people eat to live, but some of us, at least some days, live to eat. Today is one of the days. Dinner today is served in two dishes. First comes the Full-bodied hellbay forest onion soup. This is a full dish for two persons. As a starter, you better halve the recipe. One red onionOne regular onionFour Shallots1/2 liter water1/2 cube bullion1 laurel leaf1 ts dried estragon2 tbls white wine
For a second dish of today's dinner we made a Mackerel salad. It's really simple in composition, but tastes great after the sweet and heavy taste of onions. Here's what you'll need: Whole grain pasta (about four handfuls) 1 smoked mackerel with pepper 1/4 yellow pepper2 tomatoes (try to get some sweet, ripe ones)1 avocado1 shallot pine nuts3 cloves of garlic1 limereally good olive oilsalt Cook
We are both quite into coarse bread. This is a recipe that I have experimented with a bit. It is very simple, perhaps the coarsest bread I've ever made successfully. It must be made in two operations, because it is a sourdough.First day you simply blend 1 liter of coarse ground whole rye flour...Read all...
Some snapshots with echoes from ancient and recent pasts. Read the “2000 year old echoes” post to get the story in words :-)
~Guri
Taking a stroll in the ruins of Pompeii was… I don’t know… using a little bit of imagination, it felt kind of like taking a time travel about 2000 years back in time. We walked the streets, checked out local brothels and bakeries and enjoyed the sun shine on marble stones embedded in the streets. The bright white stones also reflect the moonlight, making it easy to follow the main roads in night-time. It must still be a beautiful sight, like watching the reflection of a sparkly night sky.
As we walked through the city, we noticed that wheels from horse carriages that used to fill the streets had left permanent marks in them. We were taken away by mosaic floors with the warning “be aware of the dog” (in latin) and amazingly well preserved frescos depicting sexual activity. The guide told us that 32 bakeries and 24 brothels were discovered in the excavations of Pompeii (roughly 35% of the city is still covered, though). Lars comment was: “Jaha, så det var tydeligvis såvidt litt viktigere med brød enn med morrabrød…” I won’t even try to translate that one…
After the eruption of a volcano close by the Vesuvius (Vesuvius was evidently formed during this eruption), the city of Pompeii was completely covered by volcanic stone and ashes. Along with the buildings, about 2000 of the 20-30 000 people residing there, cats, dogs and other animals were buried alive. They all had roughly three days to get out, but for some reason they didn’t. The cavities and the bones left after the decay of the bodies were so well preserved, that complete plaster casts were made at the discovery. Seeing the shape of humans, like 2000 year old echoes of their dying moments, made a profound impression somewhere in me.
The echo of a teenage boy:
The site was discovered by accident in 1749 (read more here) and is really well worth the three hour drive from Rome. I’ll add a picture gallery in a short while…
~Guri
Today we passed Pantheon again. A walk around the Pantheon is also a nice experience. I have tried to capture some of the details here.
~Lars
Some of the local inhabitants waiting for their salvation at Piazza San Pietro. Or maybe they just wants some breadcrumbs.
~Lars
(2/2) The visit to Pantheon was downright magnificent. Be sure to drop by if you visit Rome. In need of unwinding after a full day of grandeur, we relaxed at a café called Bar del Fico, where old men were playing chess beneath a tall fig tree. Nice :-)
~ Guri
(1/2) To get to the Pantheon we walked a route leading us by the Castel Sant’ Angelo which originally was built to hold the remains of the emperor Hadrian in 139 AD. It now appears as a fortified bastion which among other things served as the popes retreat site way back when (the mid-16th century I think)… We went through a bunch of charming alleys to get to the Piazza Navona and shortly thereafter, the Pantheon…
~ Guri
Headed down to the Pantheon which was amazing. The dome is the largest arched construction of its kind, concrete that is, in the world. With a diameter of 43.3 m it’s even bigger than the dome of Saint Peter’s Basilica. In other words… it’s pretty frekkin impressive! The structure as seen today was completed between 118 and 125 A.D., during the reign of Hadrian.
We relaxed at several cafés and did some window shopping in the sun. Got my eyes set on two pairs of Italian shoes, a belt and a purse. Probably not going to be able to leave them behind ;-) A perfect day. Booked a guided tour in the Vatican city for tomorrow. Really looking forward to that!
~ Guri
Our second day in Rome is a Monday. Sleeping a while, and a later breakfast than usual. This is the whole point with this trip. Take it easy, but still discover the eternal city. After all, the city is eternal, and I guess it will still be around for the next ten days.
Today we have had cappuccino, some foccachia/pannini thing for lunch, and chestnuts and beer for second lunch. Guri and I were crazy, and enjoyed a Peroni beer each in the Piazza San Pietro. We had dinner in a restaurant that gave a poor first impression. Luckily, the food totally outclassed our expectations. Even the service was good, in a nice and clumsy Italian way (as compared to the Norwegian stiff service style). A nice day.
~ Lars
We spent the daylight hours walking to the St Peters Square and relaxing in the sun. A lot of impressions and enjoying Berninis work (read about him here if you want) resulted in a heap-load of pictures… I won’t be boring you with too many - google will give you plenty that are better than mine if you are interested - and I bet Lars will post some too ;-)
Had to include the one showing of the saints in an arch… During Johannes Paulus II (or Karol Wojtyla) more people were given status as saints than during the 17 popes that went before him - IN ALL! Now, there’s one guy that knew his PR…!
~ Guri
That does it, we’re gonna stay… ;-) We’re gonna drive around in a little yellow fiat and drink a lot of wine in our scruffy castle! Wanna come?
Well, I choose to look at it this way. We are improving… Dead tired, uncaffeinated, scruffy and smelly we managed to get to the gate just in time for the final call… gahh.
Now, we are settled in a nice contemporary hotel close to the heart of the ancient city Rome.
After a good two hour sleep we had pizza and beer at a pizzeria in the neighborhood. Pictures from Fellinis La Dolce Vita hanging on maroon brick walls and tables covered by those red and white cloths we all know from the movies may be cheap tricks to set the mood… I don’t know and I don’t care - It works and I just love it
Finally, we felt fit to explore the first chunks of the eternal city. We took a night stroll towards the Piazza del Popolo, headed down the Via del Babuino to Piazza di Spagna, before stopping by the mausoleum of emperor Augustus and heading home to the Twentyone Hotel at via Cola di Rienzo. I’m pretty sure I could do the same stroll every single of the ten remaining days we’re going to spend here and still get excited.
~ Guri
At the pizzeria I was smitten, but now I find myself irretrievably falling in love.
The pictures below are sampled from this album. Feel free to visit :-)
In San Francisco we were picked up by Guri’s sister and her sisters boyfriend. We were told that the great weather just had arrived as well and that the famous San Fran fog, called Karl, hadn’t shown up to greet us. (Maybe next time Karl?). And from here on, my dear reader, begins a food adventure you must yourself embark upon.
We had the world best tacos at Tacolicious (http://tacolicioussf.com) - kudos to the chefs for only serving sustainable fish. We had icecreams from heaven at Smitten (http://www.yelp.no/biz/smitten-ice-cream-san-francisco). And let me just say that shopping for beer in Norway at the grocery store has become a laughing matter. We had a great time eating raw Oysters at a secluded (and I’m sorry to say secret) place. And before heading into the Redwood forests we ate at Plow - I’ll remember those pancakes for ever. http://www.eatatplow.com/
Thank you so much Marte and Van for showing us such a great time, we forgive you for trying to kill us in that hill - it was all worth it!
~Marianne
We left The Beaver State (nickname for Oregon) and Eugene in a long aluminum tank (Yay, Amtrak!) on a sunny Saturday afternoon. Eugene sent us on our way with a hangover (I’ll surely will remember for ever) and a great vegan lunch in our stomachs. We were heading for the Bear State and the great city of San Francisco. This meant a 15 hour ride trough dense evergreen forests (I think it was pine - looked like pine, tall as hell), darkness, sunrise, wetlands, salt refineries, ghost towns (people had to leave their homes when the wetlands were claimed by the state) and fields of berries and artichoke. Did you know Marilyn Monroe won the title “Miss California Artichoke Queen” in 1947?
The train engineer, which also served as a great guide, told us about it all. We arrived in sunny San Francisco the next morning, a little wiser.
~ Marianne
Eugene, Oregon. AKA The Party Town for Party Grrrls
Leaving Portland we were faced with two choices. Either heading for the comfort of the ocean mist at the west coast, or continuing our exploration of the Willamette Valley.
Bewildered so far away from an ocean bed, bewitched by American books and brews, our best bet became the not so bolting bus down the beautiful valley to Eugene. The city of… uhm… well, the birthplace of Nike actually.
An old man at the info center in Portland told us that Eugene was the “party town for party girls”… Standing in Eugene 24 hours later, with the dirt and gravel of this small town beneath our feet, watching the heat rise from the dusty road in front of us - I’d say we had our doubts… I swear I could hear a banjo playing somewhere in the background and a small part of me really expected to see Clint Eastwood driving one of the many trucks passing by…
We went out for dinner at a pizza place, figuring we would tuck in early and be ready for the looong train-ride down to San Francisco. Oh man, did we figure wrong! A couple of drinks, a bottle of wine, a couple of beers and a double whiskey later (“…the schmmokiest whone ya gahht, thank yah… *wink-wink*”) we found ourselves in the lively company of a granny groupie (yeah, she called herself that) and a couple of dudes and dudettes at a concert. A band of bluegrass brothers called the Conjugal Visitors blew us away with music that just made it impossible not to stomp, slap thigh and howl out loud. It was… rad.
The old man obviously knew what he was talking about. That night, Eugene really was the party town for these two Norwegian party girls. Thank you, Eugene!
~Guri
The bluegrass folks: Conjugal Visitors http://www.facebook.com/ConjugalVisitors
After a couple of days in Seattle we took the oh so cheap and great Bolt bus to the city of roses Portland, Oregon.
We almost died in the Indian summer sun looking for our hotel, which was not as close to downtown as it looked on the map. But the first half of the walk along the river Willamette was nice (much to do with that we didn’t know how far we had to go yet). The National Geographic vessel Sea Lion had docked by an old harbor and we dreamed about going for an expedition. - But we didn’t. We had our own expedition to tend to: Portland.
Portland wants to be as environmentally friendly as possible. You see it in the way they encourage you to recycle and be conscious about your effect on the environment with your everyday activities. We went to the café Laughing Planet ( read more here: http://laughingplanetcafe.com/about/history/) and actually felt good about having a “junk food” meal. Portland also has great beer (micro brewery is big on the west coast) and great shopping (we went through hell trying not to buy anything, our backpacks were already heavy enough).
But three great things about Portland:
1. Powell’s bookstore (http://www.powells.com)
2. Jogging along the river side, looking at the birds and the tame, friendly squirrels
3. Window shopping (painful, but good) down the NW 23 Avenue
~ Marianne
Vancouver Waterfront, Canada
As the sun set, we decided to take a walk along the waterfront. It is amazingly beautiful. The mountains, forests and the Pacific Ocean are all there, at your doorstep, within reach and providing both resources and recreation. A giant sculpture of a blue water drop is placed at the harbour to symbolize the significance of water in supporting life on Earth.
As kind of a spur of the moment thing, the two marine biologists headed for Vancouver, Canada yesterday. Arriving the city (Bolt Bus 10 dollars – cheap!) they immediately noticed a globe of glass glimmering in the sun. Exited to discover that it was the Telus World of Science building, the geeks decided to add it to their list of places to see and things to do…
The hight of our “Ultimate Experience” was the Hubble movie. With Leonardo DiCaprio as guide and the eye of the Hubble telescope as our vessel we travelled and marvelled at space and time for a while. I loved the way the beautiful pictures were wrapped in scientific facts. They could have eased up on the “We had to explore the universe to realize how unique our own home is - and to take care of it” kind of talk, though. The exhibit called “Sustainability”, where we were shown how much oil is used, how much water is consumed and polluted and how much non-recyclable waste is produced every year gave a hollowness to DiCaprio’s words that felt uncomfortable. Are we really taking care of Earth? In hindsight I feel like the Hubble movie was really more about finding a new home… to screw up… Lots of beautiful pictures and amazing facts made it worthwhile though.
As for the rest of the experience - Science shmience, man… It felt more like a giant playground for kids. Although we totally endorse the effort to stimulate kids curiosity through play, we were disappointed to find very little brain exercise for grownups.
Seattle by night is just as exciting. If you need tips on where to take your girlfriend/boyfriend out for a romantic evening in this city - ask us. For some reason we had quite a number of those “Oh, this would have been so romantic if only…” moments.
Our top six moments were:
1) The ferris wheel stopping at the point where we had the most spectacular view of the space needle and the city at night.
2) Taking a stroll along the Post Alley and dining at a cosy Italian restaurant called the Pink Door.
3) Walking along the waterfront at sunset.
4) Walking through the cave-like tropical fish section of the Seattle aquarium and suddenly realizing we were alone in there…!
5) Spending time at the top of the space needle at closing time.
6) Experiencing the buzz of the Pike Place Market and talking to the shop keepers.
Two marine biologist on an adventure on the West Coast of America, seeking what every advent(o)urers do: A great adventure!
(Photos will appear in a separate post)
The first stop on the pacific north coast is Seattle. They arrive Seattle downtown after dark, smell a scent of urine in the evening air, see the drug addicts and the alcoholics and the ones speaking to themselves. The marine biologist try to look like they know where they’re going, which seems to work, even when they pass the same corner for the forth time.
And right in the middle of this dodgy place they have booked a room where they will stay for three days.
The next morning, the sun brights up the city and all the dark shadows are gone. They live next to the famous Pike Place public market and have a great view of the Elliott Bay. In the morning, the smell of urine is replaced by the smell of sea, fresh coffee, flowers, sea food and vegetables. From then on Seattle becomes a romantic place. The dark alleys wasn’t that dark after all, they were romantic alleys where you go for a great dinner with your boyfriend. Unfortunately Guri had left her boyfriend at home. But, luckily Seattle willingly shares its love for art, science, food, beer and rock n’ roll. A great city to start of a great adventure for sure!